SedSat3 1.1.6
Sediment Source Apportionment Tool - Advanced statistical methods for environmental pollution research
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SourceSinkData Member List

This is the complete list of members for SourceSinkData, including all inherited members.

AddtoToolsUsed(const string &tool)SourceSinkData
AllSourceSampleNames() constSourceSinkDataprivate
ANOVA(bool use_log)SourceSinkData
ANOVA(const string &element, bool use_log)SourceSinkData
AppendSampleSet(const string &name, const Elemental_Profile_Set &elemental_profile_set=Elemental_Profile_Set())SourceSinkData
AssignAllDistributions()SourceSinkData
BetweenGroupCovarianceMatrix()SourceSinkDataprivate
BootStrap(const double &percentage, unsigned int num_iterations, string target_sample, bool use_softmax)SourceSinkData
BootStrap(Results *results, const double &percentage, unsigned int num_iterations, string target_sample, bool use_softmax)SourceSinkData
BoxCoxTransformed(bool calculate_optimal_lambda=false)SourceSinkData
BracketTest(const string &target_sample, bool correct_based_on_om_n_size)SourceSinkData
BracketTest(bool correct_based_on_om_n_size, bool exclude_elements, bool exclude_samples)SourceSinkData
BuildSourceMeanMatrix(parameter_mode param_mode=parameter_mode::based_on_fitted_distribution)SourceSinkDataprivate
BuildSourceMeanMatrix_Isotopes(parameter_mode param_mode=parameter_mode::based_on_fitted_distribution)SourceSinkDataprivate
Clear()SourceSinkData
constituent_order_SourceSinkDataprivate
ConstituentOrder()SourceSinkDataprivate
CountElements(bool exclude_elements) constSourceSinkData
CreateCorrectedAndFilteredDataset(bool exclude_samples, bool exclude_elements, bool omnsizecorrect, const string &target="") constSourceSinkData
CreateCorrectedDataset(const string &target, bool omnsizecorrect, map< string, element_information > *elementinfo)SourceSinkData
DFA_eigvector()SourceSinkDataprivate
DFA_P_Value()SourceSinkDataprivate
DFA_Projected()SourceSinkDataprivate
DFA_Projected(const string &source1, const string &source2)SourceSinkDataprivate
DFA_Projected(const string &source1, SourceSinkData *original)SourceSinkDataprivate
DFA_weight_vector(const string &source1, const string &source2)SourceSinkDataprivate
DFATransformed(const CMBVector &eigenvector, const string &source_group)SourceSinkDataprivate
DifferentiationPower(bool use_log, bool include_target)SourceSinkData
DifferentiationPower(const string &source1, const string &source2, bool use_log)SourceSinkData
DifferentiationPower_P_value(bool include_target)SourceSinkData
DifferentiationPower_Percentage(bool include_target)SourceSinkData
DifferentiationPower_Percentage(const string &source1, const string &source2)SourceSinkData
DiscriminantFunctionAnalysis()SourceSinkData
DiscriminantFunctionAnalysis(const string &source1, const string &source2)SourceSinkData
DiscriminantFunctionAnalysis(const string &source1)SourceSinkData
distance_coeff_SourceSinkDataprivate
element_distributions_SourceSinkDataprivate
element_information_SourceSinkDataprivate
element_order_SourceSinkDataprivate
ElementDataToJsonObject() constSourceSinkData
ElementInformationToJsonObject() constSourceSinkData
ElementOrder()SourceSinkDataprivate
ElementsToBeUsedInCMB()SourceSinkData
epsilon_SourceSinkDataprivate
error_stdev_SourceSinkDataprivate
error_stdev_isotope_SourceSinkDataprivate
ExtractChemicalElements(bool isotopes) constSourceSinkData
ExtractConcentrationData(const vector< vector< string > > &indicators) constSourceSinkData
ExtractConcentrationSet()SourceSinkData
ExtractElementConcentrations(const string &element, const string &group) constSourceSinkData
ExtractElementDataByGroup(const string &element) constSourceSinkData
ExtractSamplesAsProfileSet(const vector< vector< string > > &indicators) constSourceSinkData
ExtractSpecificElements(const vector< string > &element_list) constSourceSinkData
FirstOMConstituent()SourceSinkData
FirstSizeConstituent()SourceSinkData
GetCalculatedElementMeans()SourceSinkData
GetCalculatedElementMu()SourceSinkData
GetCalculatedElementSigma()SourceSinkData
GetContribution()SourceSinkData
GetContributionVector(bool include_all=true)SourceSinkDataprivate
GetContributionVectorSoftmax()SourceSinkDataprivate
GetElementalProfile(const string &sample_name)SourceSinkDataprivate
GetElementDistribution(const string &element_name)SourceSinkData
GetElementDistribution(const string &element_name, const string &sample_group)SourceSinkData
GetElementDistributionMuParameter(size_t element_index, size_t source_index)SourceSinkDataprivate
GetElementDistributionMuValue(size_t element_index, size_t source_index)SourceSinkDataprivate
GetElementDistributionSigmaParameter(size_t element_index, size_t source_index)SourceSinkDataprivate
GetElementDistributionSigmaValue(size_t element_index, size_t source_index)SourceSinkDataprivate
GetElementInformation()SourceSinkData
GetElementInformation(const string &element_name)SourceSinkData
GetElementNames() constSourceSinkData
GetEstimatedElementMean()SourceSinkData
GetEstimatedElementMu()SourceSinkData
GetEstimatedElementSigma()SourceSinkData
GetFittedDistribution(const string &element_name)SourceSinkData
GetGroupNames() constSourceSinkData
GetMLRResults()SourceSinkData
GetObjectiveFunctionValue()SourceSinkData
GetObservedElementalProfile()SourceSinkData
GetObservedElementalProfile_Isotope()SourceSinkData
GetObservedvsModeledElementalProfile(parameter_mode param_mode=parameter_mode::based_on_fitted_distribution)SourceSinkData
GetObservedvsModeledElementalProfile_Isotope(parameter_mode param_mode=parameter_mode::based_on_fitted_distribution)SourceSinkData
GetOptions()SourceSinkData
GetOutputPath() constSourceSinkData
GetParameterName(int index) constSourceSinkData
GetParameterValue(size_t index) constSourceSinkDataprivate
GetParameterValue() constSourceSinkDataprivate
GetPredictedElementalProfile(parameter_mode param_mode=parameter_mode::based_on_fitted_distribution)SourceSinkData
GetPredictedElementalProfile_Isotope(parameter_mode param_mode=parameter_mode::based_on_fitted_distribution)SourceSinkData
GetPredictedValues()SourceSinkData
GetSampleNames(const string &group_name) constSourceSinkData
GetSampleSet(const string &name)SourceSinkData
GetSourceContributions()SourceSinkDataprivate
GetSourceOrder() constSourceSinkDataprivate
GetSourceProfiles()SourceSinkData
GetTargetGroup() constSourceSinkData
Gradient(const CVector &parameters, estimation_mode est_mode)SourceSinkDataprivate
GradientUpdate(estimation_mode estmode=estimation_mode::elemental_profile_and_contribution)SourceSinkData
GrandMean(const string &element, bool use_log)SourceSinkDataprivate
IncludeExcludeAllElements(bool include_in_analysis)SourceSinkData
IncludeExcludeElementsBasedOn(const vector< string > &elements)SourceSinkData
InitializeContributionsRandomly()SourceSinkDataprivate
InitializeContributionsRandomlySoftmax()SourceSinkDataprivate
InitializeParametersAndObservations(const string &targetsamplename, estimation_mode est_mode=estimation_mode::elemental_profile_and_contribution)SourceSinkData
isotope_order_SourceSinkDataprivate
IsotopeOrder()SourceSinkDataprivate
IsotopesToBeUsedInCMB()SourceSinkData
LM_Batch(transformation transform, bool apply_om_size_correction, map< string, vector< string > > &negative_elements)SourceSinkData
LogLikelihood(estimation_mode est_mode=estimation_mode::elemental_profile_and_contribution)SourceSinkData
LogLikelihoodModelvsMeasured(estimation_mode est_mode=estimation_mode::elemental_profile_and_contribution)SourceSinkDataprivate
LogLikelihoodModelvsMeasured_Isotope(estimation_mode est_mode=estimation_mode::elemental_profile_and_contribution)SourceSinkDataprivate
LogLikelihoodSourceElementalDistributions()SourceSinkDataprivate
LogPriorContributions()SourceSinkDataprivate
LumpAllProfileSets()SourceSinkDataprivate
MCMC(const string &target_sample, map< string, string > arguments, CMCMC< SourceSinkData > *mcmc, ProgressWindow *progress_window, const string &working_folder)SourceSinkData
MCMC_Batch(map< string, string > arguments, CMCMC< SourceSinkData > *mcmc, ProgressWindow *progress_window, const string &working_folder)SourceSinkData
MeanElementalContent(const string &group_name)SourceSinkDataprivate
MeanElementalContent()SourceSinkDataprivate
NegativeValueCheck()SourceSinkData
numberofconstituents_SourceSinkDataprivate
numberofisotopes_SourceSinkDataprivate
numberofsourcesamplesets_SourceSinkDataprivate
observation(size_t i)SourceSinkData
observations_SourceSinkDataprivate
ObservationsCount()SourceSinkData
ObservedDataforSelectedSample(const string &SelectedTargetSample="")SourceSinkDataprivate
ObservedDataforSelectedSample_Isotope(const string &SelectedTargetSample="")SourceSinkDataprivate
ObservedDataforSelectedSample_Isotope_delta(const string &SelectedTargetSample="")SourceSinkDataprivate
OMandSizeConstituents()SourceSinkData
omconstituent_SourceSinkDataprivate
OneStepLevenberg_Marquardt(double lambda)SourceSinkDataprivate
OneStepLevenberg_Marquardt_softmax(double lambda)SourceSinkDataprivate
operator=(const SourceSinkData &other)SourceSinkData
OptimalBoxCoxParameters()SourceSinkDataprivate
options_SourceSinkDataprivate
OptionsToJsonObject() constSourceSinkData
OutlierAnalysisForAll(const double &lower_threshold=-3, const double &upper_threshold=3)SourceSinkData
outputpath_SourceSinkDataprivate
parameter(size_t i)SourceSinkData
parameter(size_t i) constSourceSinkData
parameter_estimation_mode_SourceSinkDataprivate
ParameterEstimationMode()SourceSinkData
Parameters()SourceSinkData
parameters_SourceSinkDataprivate
ParametersCount()SourceSinkData
PerformRegressionVsOMAndSize(const string &om, const string &particle_size, regression_form form, const double &p_value_threshold=0.05)SourceSinkData
PopulateConstituentOrders()SourceSinkData
PopulateElementDistributions()SourceSinkData
PopulateElementInformation(const map< string, element_information > *ElementInfo=nullptr)SourceSinkData
PredictTarget(parameter_mode param_mode=parameter_mode::direct)SourceSinkDataprivate
PredictTarget_Isotope(parameter_mode param_mode=parameter_mode::direct)SourceSinkDataprivate
PredictTarget_Isotope_delta(parameter_mode param_mode=parameter_mode::based_on_fitted_distribution)SourceSinkDataprivate
RandomlyEliminateSourceSamples(const double &percentage)SourceSinkDataprivate
RandomlypickSamples(const double &percentage) constSourceSinkDataprivate
ReadElementDatafromJsonObject(const QJsonObject &jsonobject)SourceSinkData
ReadElementInformationfromJsonObject(const QJsonObject &jsonobject)SourceSinkData
ReadFromFile(QFile *fil)SourceSinkData
ReadOptionsfromJsonObject(const QJsonObject &jsonobject)SourceSinkData
ReadToolsUsedFromJsonObject(const QJsonArray &jsonarray)SourceSinkData
regression_p_value_threshold_SourceSinkDataprivate
ReplaceSourceAsTarget(const string &source_sample_name) constSourceSinkDataprivate
ResidualJacobian()SourceSinkDataprivate
ResidualJacobian_arma()SourceSinkDataprivate
ResidualJacobian_softmax()SourceSinkDataprivate
ResidualVector()SourceSinkDataprivate
ResidualVector_arma()SourceSinkDataprivate
Role(const element_information::role &role) constSourceSinkDataprivate
Role(const QString &role_string) constSourceSinkDataprivate
rtw_SourceSinkDataprivate
Sample(const string &sample_name) constSourceSinkData
SamplesetsOrder()SourceSinkDataprivate
samplesetsorder_SourceSinkDataprivate
selected_target_sample_SourceSinkDataprivate
SelectedTargetSample() constSourceSinkData
SetContribution(size_t source_index, double contribution_value)SourceSinkDataprivate
SetContribution(const CVector &contributions)SourceSinkDataprivate
SetContributionSoftmax(size_t source_index, double softmax_value)SourceSinkDataprivate
SetContributionSoftmax(const CVector &softmax_params)SourceSinkDataprivate
SetOMandSizeConstituents(const string &_omconstituent, const string &_sizeconsituent)SourceSinkData
SetOMandSizeConstituents(const vector< string > &_omsizeconstituents)SourceSinkData
SetOutputPath(const string &output_path)SourceSinkData
SetParameterEstimationMode(estimation_mode est_mode)SourceSinkData
SetParameterValue(size_t index, double value)SourceSinkData
SetParameterValue(const CVector &values)SourceSinkDataprivate
SetProgressWindow(ProgressWindow *_rtw)SourceSinkData
SetSelectedTargetSample(const string &sample_name)SourceSinkData
SetTargetGroup(const string &targroup)SourceSinkData
size_om_order_SourceSinkDataprivate
sizeconsituent_SourceSinkDataprivate
SizeOMOrder()SourceSinkDataprivate
SolveLevenberg_Marquardt(transformation trans=transformation::linear)SourceSinkData
SourceGroupNames() constSourceSinkData
SourceSinkData()SourceSinkData
SourceSinkData(const SourceSinkData &other)SourceSinkData
StepwiseDiscriminantFunctionAnalysis(const string &source1, const string &source2)SourceSinkData
StepwiseDiscriminantFunctionAnalysis()SourceSinkData
StepwiseDiscriminantFunctionAnalysis(const string &source1)SourceSinkData
t_TestPValue(const string &source1, const string &source2, bool use_log)SourceSinkData
target_group_SourceSinkDataprivate
TheRest(const string &excluded_source)SourceSinkDataprivate
tools_used_SourceSinkDataprivate
ToolsUsed(const string &tool_name)SourceSinkData
ToolsUsedToJsonObject() constSourceSinkData
TotalNumberofSourceSamples() constSourceSinkDataprivate
TotalScatterMatrix()SourceSinkDataprivate
VerifySource(const string &source_group, bool use_softmax, bool apply_om_size_correction)SourceSinkData
WilksLambda()SourceSinkDataprivate
WithinGroupCovarianceMatrix()SourceSinkDataprivate
WriteDataToFile(QFile *file)SourceSinkData
WriteToFile(QFile *file)SourceSinkData